Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V _ __iter__() (qiime2.plugin.Citations method) A Action Action() (in module qiime2.sdk) action() (qiime2.sdk.usage.Usage method) Archive Artifact Artifact API Artifact class Artifact() (in module qiime2.sdk) assert_has_line_matching() (qiime2.sdk.usage.UsageVariable method) assert_no_nans_in_tables() (in module qiime2.plugin.testing) assert_output_type() (qiime2.sdk.usage.UsageVariable method) assertRegisteredSemanticType() (qiime2.plugin.testing.TestPluginBase method) assertSemanticTypeRegisteredToFormat() (qiime2.plugin.testing.TestPluginBase method) B BinaryFileFormat (class in qiime2.plugin) Bool (in module qiime2.plugin) C Categorical (in module qiime2.plugin) CategoricalMetadataColumn (class in qiime2) Choices (class in qiime2.plugin) CitationRecord (class in qiime2.plugin) Citations (class in qiime2.plugin) Collection (in module qiime2.plugin) column_count (qiime2.Metadata property) columns (qiime2.Metadata property) comment() (qiime2.sdk.usage.Usage method) Conda metapackage construct_artifact_collection() (qiime2.sdk.usage.Usage method) D Deployment Directory Format DirectoryFormat (class in qiime2.plugin) Distribution drop_missing_values() (qiime2.MetadataColumn method) DRY duplicate() (in module qiime2.util) E End() (in module qiime2.plugin) execute_examples() (qiime2.plugin.testing.TestPluginBase method) F File Format filter_columns() (qiime2.Metadata method) filter_ids() (qiime2.Metadata method) (qiime2.MetadataColumn method) Float (in module qiime2.plugin) Format Framework G Galaxy get_action() (qiime2.sdk.Context method) get_artifact_collection_member() (qiime2.sdk.usage.Usage method) get_available_cores() (in module qiime2.plugin.util) get_column() (qiime2.Metadata method) get_data_path() (qiime2.plugin.testing.TestPluginBase method) get_ids() (qiime2.Metadata method) (qiime2.MetadataColumn method) get_metadata_column() (qiime2.sdk.usage.Usage method) get_missing() (qiime2.MetadataColumn method) get_transformer() (qiime2.plugin.testing.TestPluginBase method) get_value() (qiime2.MetadataColumn method) H has_missing_values() (qiime2.MetadataColumn method) help() (qiime2.sdk.usage.Usage method) I Identifier Identity ImplementationError() (in module qiime2.sdk) import_from_format() (qiime2.sdk.usage.Usage method) init_artifact() (qiime2.sdk.usage.Usage method) init_artifact_collection() (qiime2.sdk.usage.Usage method) init_artifact_from_url() (qiime2.sdk.usage.Usage method) init_format() (qiime2.sdk.usage.Usage method) init_metadata() (qiime2.sdk.usage.Usage method) init_metadata_from_url() (qiime2.sdk.usage.Usage method) Input Int (in module qiime2.plugin) Interface J Jobs (in module qiime2.plugin) L List (in module qiime2.plugin) load() (qiime2.Metadata class method) (qiime2.plugin.Citations class method) M make_artifact() (qiime2.sdk.Context method) merge() (qiime2.Metadata method) merge_metadata() (qiime2.sdk.usage.Usage method) Metadata (class in qiime2) (in module qiime2.plugin) MetadataColumn (class in qiime2) (in module qiime2.plugin) MetadataFileError (class in qiime2.metadata) Method Method() (in module qiime2.sdk) missing_scheme (qiime2.MetadataColumn property) N name (qiime2.MetadataColumn property) Numeric (in module qiime2.plugin) NumericMetadataColumn (class in qiime2) O Output P package (qiime2.plugin.testing.TestPluginBase attribute) Pairwise sequence alignment Parameter parse_format() (in module qiime2.sdk) parse_type() (in module qiime2.sdk) Payload peek() (qiime2.sdk.usage.Usage method) Pipeline Pipeline() (in module qiime2.sdk) Plugin (class in qiime2.plugin) Plugin Manager PluginManager() (in module qiime2.sdk) PluginMethods (class in qiime2.plugin.plugin) PluginPipelines (class in qiime2.plugin.plugin) PluginVisualizers (class in qiime2.plugin.plugin) Primitive Type Properties (class in qiime2.plugin) Provenance Provenance Replay Python 3 API Q q2cli R Range (class in qiime2.plugin) redirected_stdio() (in module qiime2.util) register_artifact_class() (qiime2.plugin.Plugin method) register_formats() (qiime2.plugin.Plugin method) register_function() (qiime2.plugin.plugin.PluginMethods method) (qiime2.plugin.plugin.PluginPipelines method) (qiime2.plugin.plugin.PluginVisualizers method) register_semantic_type_to_format() (qiime2.plugin.Plugin method) register_semantic_types() (qiime2.plugin.Plugin method) register_transformer() (qiime2.plugin.Plugin method) register_validator() (qiime2.plugin.Plugin method) register_views() (qiime2.plugin.Plugin method) Result Result() (in module qiime2.sdk) ResultCollection() (in module qiime2.sdk) Results() (in module qiime2.sdk) S save() (qiime2.plugin.Citations method) Semantic Type SemanticType() (in module qiime2.plugin) Set (in module qiime2.plugin) setUp() (qiime2.plugin.testing.TestPluginBase method) Single-Use Plugin (SUP) SingleFileDirectoryFormat() (in module qiime2.plugin) Start() (in module qiime2.plugin) Str (in module qiime2.plugin) T tearDown() (qiime2.plugin.testing.TestPluginBase method) test_dir_prefix (qiime2.plugin.testing.TestPluginBase attribute) TestPluginBase (class in qiime2.plugin.testing) TextFileFormat (class in qiime2.plugin) Threads (in module qiime2.plugin) tl dr to_dataframe() (qiime2.Metadata method) (qiime2.MetadataColumn method) to_series() (qiime2.MetadataColumn method) transform() (in module qiime2.plugin.util) transform_format() (qiime2.plugin.testing.TestPluginBase method) Transformer Type type_from_ast() (in module qiime2.sdk) TypeMap (class in qiime2.plugin) TypeMatch (class in qiime2.plugin) U UninitializedPluginManagerError() (in module qiime2.sdk) UsageAction (class in qiime2.sdk.usage) (qiime2.sdk.usage.Usage attribute) UsageInputs (class in qiime2.sdk.usage) (qiime2.sdk.usage.Usage attribute) UsageOutputNames (class in qiime2.sdk.usage) (qiime2.sdk.usage.Usage attribute) UsageOutputs (class in qiime2.sdk.usage) UsageVariable (class in qiime2.sdk.usage) UUID V ValidationError (class in qiime2.plugin) ValidationError() (in module qiime2.sdk) View view_as_metadata() (qiime2.sdk.usage.Usage method) Visualization (in module qiime2.plugin) (Type) Visualization() (in module qiime2.sdk) Visualizer Visualizer() (in module qiime2.sdk)
